PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18369.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 389aa    MW: 42546.8 Da    PI: 8.9434
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18369.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP83.94.1e-2657132379
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesss 79 
                 g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk ++WLl+  k  i++l+ +++++  ++ ++++ 
  KHN18369.1  57 GGKDRHSKVCTIRGLRDRRIRLSVPTAIELYDLQEKLGLNQPSKVVDWLLETTKSDIDKLPPLQFPHC-FAHHHQQT 132
                 78*************************************************************55544.22222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.9E-2258170IPR005333Transcription factor, TCP
PROSITE profilePS5136927.69858116IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MMIESSSKVH GANNQQEGDD NNIKIEKLSK APSTSSSSRS WSAFRNPRIV RVSRSLGGKD  60
RHSKVCTIRG LRDRRIRLSV PTAIELYDLQ EKLGLNQPSK VVDWLLETTK SDIDKLPPLQ  120
FPHCFAHHHQ QTLLPGTSQF SLGGFYDAAA NGGNENHLMA TKSTRYWDID SHSLNNGKDL  180
VESVSNSLKG KSWIKTNEQE NHQDGGIGGS SSTHNNREEY SSAHYKLFPI GTTTNNSYLP  240
GLLNNGMTHN SSNHHSEPSS LSLSHFGSHG LFPSSHNAHP SSCSGVPFSS CNFSAASSGP  300
QLLFCPPTSA TPASAFYSVE SDPRQSNNNV QIFSSSSQVM MPHPLIQSLH STNSTLNRRI  360
PTSFSSKLLD SDNNNDRSQP NKGSSTTRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006600589.10.0PREDICTED: transcription factor TCP17
RefseqXP_006600590.10.0PREDICTED: transcription factor TCP17
RefseqXP_006600591.10.0PREDICTED: transcription factor TCP17
TrEMBLA0A0B2QEB50.0A0A0B2QEB5_GLYSO; Transcription factor TCP5
TrEMBLK7MKI80.0K7MKI8_SOYBN; Uncharacterized protein
STRINGGLYMA17G08761.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-47TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]